PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold13705-abinit-gene-0.5-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 97aa    MW: 10861.3 Da    PI: 10.7392
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold13705-abinit-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.12e-24118851127
                                               NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfyk 110
                                                       +k+++ ew+fFs+rd k+++++r+nrat+sg Wk tgkd++++++ +++++g+ ktLvfy 
  snap_masked-scaffold13705-abinit-gene-0.5-mRNA-1  11 IKSDDPEWFFFSPRDFKNSNSNRRNRATQSGCWKVTGKDRKIKARgTNNVIGTMKTLVFYG 71 
                                                       567888**************************************967778*********** PP

                                               NAM 111 grapkgektdWvmheyr 127
                                                       gr   g++t+ vmhey+
  snap_masked-scaffold13705-abinit-gene-0.5-mRNA-1  72 GRVGGGVRTNGVMHEYH 88 
                                                       ****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.609197IPR003441NAC domain
SuperFamilySSF1019412.09E-261192IPR003441NAC domain
PfamPF023651.5E-131588IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MLPGCAEFSV IKSDDPEWFF FSPRDFKNSN SNRRNRATQS GCWKVTGKDR KIKARGTNNV  60
IGTMKTLVFY GGRVGGGVRT NGVMHEYHPT VTLPHQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-18178770138Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076GGRVGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015948138.11e-32PREDICTED: NAC domain-containing protein 62-like
SwissprotF4JN354e-30NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A0L9VPW52e-31A0A0L9VPW5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SZB68e-32A0A0S3SZB6_PHAAN; Uncharacterized protein
STRINGPOPTR_0014s10350.11e-30(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.31e-27NAC transcription factor-like 9